Breaker, Ronald R.: search on Z-Library

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1

REGULATION OF BACTERIAL GENE EXPRESSION BY RIBOSWITCHES

Winkler, Wade C., Breaker, Ronald R.

Journal:

Annual Review of Microbiology

Year:

2005

Language:

english

File:

PDF, 747 KB

english, 2005

2

Former Orphan Riboswitches Reveal Unexplored Areas of Bacterial Metabolism, Signaling and Gene Control Processes

Sherlock, Madeline, Breaker, Ronald R

Journal:

Year:

2020

Language:

english

File:

PDF, 1.13 MB

english, 2020

3

Emergence of a Replicating Species from an in vitro RNA Evolution Reaction

Ronald R. Breaker and Gerald F. Joyce

Journal:

Proceedings of the National Academy of Sciences

Year:

1994

Language:

english

File:

PDF, 1.04 MB

english, 1994

4

Kinetics of RNA Degradation by Specific Base Catalysis of Transesterification Involving the 2‘-Hydroxyl Group

Li, Yingfu, Breaker, Ronald R.

Journal:

Journal of the American Chemical Society

Year:

1999

Language:

english

File:

PDF, 110 KB

english, 1999

5

DNA enzymes

Breaker, Ronald R.

Journal:

Nature Biotechnology

Year:

1997

File:

PDF, 1.24 MB

1997

6

Importance of the Debye Screening Length on Nanowire Field Effect Transistor Sensors

Stern, Eric, Wagner, Robin, Sigworth, Fred J., Breaker, Ronald, Fahmy, Tarek M., Reed, Mark A.

Journal:

Year:

2007

Language:

english

File:

PDF, 177 KB

english, 2007

7

Thiamine Pyrophosphate Riboswitches Are Targets for the Antimicrobial Compound Pyrithiamine

Narasimhan Sudarsan, Smadar Cohen-Chalamish, Shingo Nakamura, Gail Mitchell Emilsson, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

2005

Language:

english

File:

PDF, 497 KB

english, 2005

8

Integron attI1 Sites, Not Riboswitches, Associate with Antibiotic Resistance Genes

Roth, Adam, Breaker, Ronald R.

Journal:

Year:

2013

Language:

english

File:

PDF, 79 KB

english, 2013

9

Gene regulation by riboswitches

Mandal, Maumita, Breaker, Ronald R.

Journal:

Nature Reviews Molecular Cell Biology

Year:

2004

Language:

english

File:

PDF, 394 KB

english, 2004

10

The Kinetics of Ligand Binding by an Adenine-Sensing Riboswitch

Wickiser, J. Kenneth, Cheah, Ming T., Breaker, Ronald R., Crothers, Donald M.

Journal:

Year:

2005

Language:

english

File:

PDF, 1008 KB

english, 2005

11

The Expanding View of RNA and DNA Function

Breaker, Ronald R., Joyce, Gerald F.

Journal:

Chemistry & Biology

Year:

2014

Language:

english

File:

PDF, 605 KB

english, 2014

12

A DNA enzyme that cleaves RNA

Ronald R. Breaker, Gerald F. Joyce

Journal:

Chemistry & Biology

Year:

1994

Language:

english

File:

PDF, 911 KB

english, 1994

13

The Structural and Functional Diversity of Metabolite-Binding Riboswitches

Roth, Adam, Breaker, Ronald R.

Journal:

Annual Review of Biochemistry

Year:

2009

Language:

english

File:

PDF, 1.10 MB

english, 2009

14

Biochemical analysis of pistol self-cleaving ribozymes

Harris, Kimberly A., Lünse, Christina E., Li, Sanshu, Brewer, Kenneth I., Breaker, Ronald R.

Journal:

Year:

2015

Language:

english

File:

PDF, 673 KB

english, 2015

15

Riboswitches as versatile gene control elements

Brian J Tucker, Ronald R Breaker

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 208 KB

english, 2005

16

Bacterial Riboswitches Cooperatively Bind Ni2+ or Co2+ Ions and Control Expression of Heavy Metal Transporters

Furukawa, Kazuhiro, Ramesh, Arati, Zhou, Zhiyuan, Weinberg, Zasha, Vallery, Tenaya, Winkler, Wade C., Breaker, Ronald R.

Journal:

Year:

2015

Language:

english

File:

PDF, 3.17 MB

english, 2015

17

Riboswitches and Translation Control

Breaker, Ronald R.

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2018

Language:

english

File:

PDF, 654 KB

english, 2018

18

A bacterial riboswitch class senses xanthine and uric acid to regulate genes associated with purine oxidation

Yu, Diane, Breaker, Ronald R

Journal:

Year:

2020

File:

PDF, 2.78 MB

2020

19

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

Serganov, Alexander, Polonskaia, Anna, Phan, Anh Tuân, Breaker, Ronald R., Patel, Dinshaw J.

Journal:

Year:

2006

Language:

english

File:

PDF, 1000 KB

english, 2006

20

Bacterial aptamers that selectively bind glutamine

Ames, Tyler D., Breaker, Ronald R.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.67 MB

english, 2011

21

SAM-VI RNAs Selectively Bind S -adenosylmethionine and Exhibit Similarities to SAM-III Riboswitches

Arachchilage, Gayan Mirihana, Sherlock, Madeline E, Weinberg, Zasha, Breaker, Ronald R

Journal:

Year:

2017

Language:

english

File:

PDF, 1.73 MB

english, 2017

22

10.1038/14947

Breaker, Ronald R., Koizumi, Makoto, Soukup, Garrett A., Kerr, Jo Nita Q.

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 1.38 MB

english, 1999

23

Structural basis of ligand binding by a c-di-GMP riboswitch

Smith, Kathryn D, Lipchock, Sarah V, Ames, Tyler D, Wang, Jimin, Breaker, Ronald R, Strobel, Scott A

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 675 KB

english, 2009

24

Capping DNA with DNA †

Li, Yingfu, Liu, Yong, Breaker, Ronald R.

Journal:

Year:

2000

Language:

english

File:

PDF, 209 KB

english, 2000

25

Molecular Recognition of cAMP by an RNA Aptamer †

Koizumi, Makoto, Breaker, Ronald R.

Journal:

Year:

2000

Language:

english

File:

PDF, 152 KB

english, 2000

26

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations

Perreault, Jonathan, Weinberg, Zasha, Roth, Adam, Popescu, Olivia, Chartrand, Pascal, Ferbeyre, Gerardo, Breaker, Ronald R., Wasserman, Wyeth W.

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

27

The Biology of Free Guanidine As Revealed by Riboswitches

Breaker, Ronald R., Atilho, Ruben M., Malkowski, Sarah N., Nelson, James W., Sherlock, Madeline E.

Journal:

Year:

2017

Language:

english

File:

PDF, 769 KB

english, 2017

28

Disruption of the OLE ribonucleoprotein complex causes magnesium toxicity in Bacillus halodurans

Harris, Kimberly A., Odzer, Nicole B., Breaker, Ronald R.

Journal:

Molecular Microbiology

Year:

2019

Language:

english

File:

PDF, 724 KB

english, 2019

29

Bacillus halodurans OapB forms a high-affinity complex with the P13 region of the noncoding RNA OLE

Widner, Danielle L., Harris, Kimberly A., Corey, Lukas, Breaker, Ronald R.

Journal:

Journal of Biological Chemistry

Year:

2020

File:

PDF, 1.08 MB

2020

30

A plant 5S ribosomal RNA mimic regulates alternative splicing of transcription factor IIIA pre-mRNAs

Hammond, Ming C, Wachter, Andreas, Breaker, Ronald R

Journal:

Nature Structural and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 756 KB

english, 2009

31

Phosphorylating DNA with DNA

Yingfo Li and Ronald R. Breaker

Journal:

Proceedings of the National Academy of Sciences

Year:

1999

Language:

english

File:

PDF, 1.87 MB

english, 1999

32

Control of bacterial exoelectrogenesis by c-AMP-GMP

Nelson, James W., Sudarsan, Narasimhan, Phillips, Grace E., Stav, Shira, Lünse, Christina E., McCown, Phillip J., Breaker, Ronald R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 899 KB

english, 2015

33

Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity

Weinberg, Zasha, Nelson, James W., Lünse, Christina E., Sherlock, Madeline E., Breaker, Ronald R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

34

Large Noncoding RNAs in Bacteria

Harris, Kimberly A., Breaker, Ronald R.

Journal:

Microbiology Spectrum

Year:

2018

Language:

english

File:

PDF, 1.48 MB

english, 2018

35

RNA Switches Out in the Cold

Ronald R. Breaker

Journal:

Year:

2010

Language:

english

File:

PDF, 98 KB

english, 2010

36

Prospects for Riboswitch Discovery and Analysis

Ronald R. Breaker

Journal:

Year:

2011

Language:

english

File:

PDF, 946 KB

english, 2011

37

Riboswitch Control of Gene Expression in Plants by Splicing and Alternative 3′ End Processing of mRNAs

Andreas Wachter, Meral Tunc-Ozdemir, Beth C. Grove, Pamela J. Green, David K. Shintani and Ronald R. Breaker

Journal:

Year:

2007

Language:

english

File:

PDF, 3.41 MB

english, 2007

38

Biochemical analysis of hatchet self-cleaving ribozymes

Li, Sanshu, Lünse, Christina E., Harris, Kimberly A., Breaker, Ronald R.

Journal:

Year:

2015

Language:

english

File:

PDF, 426 KB

english, 2015

39

Inventing and improving ribozyme function: Rational design versus iterative selection methods

Ronald R. Breaker, Gerald F. Joyce

Journal:

Trends in Biotechnology

Year:

1994

Language:

english

File:

PDF, 792 KB

english, 1994

40

Identification of candidate structured RNAs in the marine organism 'CandidatusPelagibacter ubique'

Michelle M Meyer, Tyler D Ames, Daniel P Smith, Zasha Weinberg, Michael S Schwalbach, Stephen J Giovannoni, Ronald R Breaker

Journal:

Year:

2009

Language:

english

File:

PDF, 521 KB

english, 2009

41

Design and Antimicrobial Action of Purine Analogues That Bind Guanine Riboswitches

Kim, Jane N., Blount, Kenneth F., Puskarz, Izabela, Lim, Jinsoo, Link, Kristian H., Breaker, Ronald R.

Journal:

ACS Chemical Biology

Year:

2009

Language:

english

File:

PDF, 4.25 MB

english, 2009

42

In Vitro Selection of Catalytic Polynucleotides

Breaker, Ronald R.

Journal:

Chemical Reviews

Year:

1997

Language:

english

File:

PDF, 807 KB

english, 1997

43

Tandem riboswitches form a natural Boolean logic gate to control purine metabolism in bacteria

Sherlock, Madeline E, Sudarsan, Narasimhan, Stav, Shira, Breaker, Ronald R

Journal:

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

44

Rational design of allosteric ribozymes

Jin Tang, Ronald R. Breaker

Journal:

Chemistry & Biology

Year:

1997

Language:

english

File:

PDF, 1.96 MB

english, 1997

45

Production of RNA by a polymerase protein encapsulated within phospholipid vesicles

Ajoy C. Chakrabarti, Ronald R. Breaker, Gerald F. Joyce, David W. Deamer

Journal:

Journal of Molecular Evolution

Year:

1994

Language:

english

File:

PDF, 663 KB

english, 1994

46

Unique glycine-activated riboswitch linked to glycine–serine auxotrophy in SAR11

H. James Tripp, Michael S. Schwalbach, Michelle M. Meyer, Joshua B. Kitner, Ronald R. Breaker, Stephen J. Giovannoni

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 440 KB

english, 2009

47

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis

Weinberg, Zasha, Perreault, Jonathan, Meyer, Michelle M., Breaker, Ronald R.

Journal:

Year:

2009

Language:

english

File:

PDF, 407 KB

english, 2009

48

RNA Science and its Applications—a look toward the future

Breaker, Ronald R., Conklin, Douglas S., Gold, Larry, Söll, Dieter, Montimurro, Jennifer S., Agris, Paul F.

Journal:

Year:

2012

Language:

english

File:

PDF, 814 KB

english, 2012

49

Numerous small hammerhead ribozyme variants associated with Penelope-like retrotransposons cleave RNA as dimers

Lünse, Christina E., Weinberg, Zasha, Breaker, Ronald R.

Journal:

Year:

2016

Language:

english

File:

PDF, 573 KB

english, 2016

50

A DNA enzyme with Mg2+-dependent RNA phosphoesterase activity

Ronald R. Breaker, Gerald F. Joyce

Journal:

Chemistry & Biology

Year:

1995

Language:

english

File:

PDF, 1.86 MB

english, 1995

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